PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_01.2240
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family NF-YC
Protein Properties Length: 136aa    MW: 14764 Da    PI: 10.1039
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_01.2240genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC41.23.6e-1314932098
                          NF-YC 20 elPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavt.rtdifdflvdivpr 98
                                   ++P  rikki+k d+++++i +ea  l+s + +lf+  lt  +   a  +krr +k   + +av  ++ + dfl+d  p 
  evm.model.AsparagusV1_01.2240 14 SFPTGRIKKIIKIDQEINKINSEALHLISISADLFLASLTEGARDAAVGKKRRIIKIDHLRSAVRsHAPTSDFLLDCLPA 93
                                   79**********************************************************99996256799*****9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    
MDTSQDEVPA LTPSFPTGRI KKIIKIDQEI NKINSEALHL ISISADLFLA SLTEGARDAA  60
VGKKRRIIKI DHLRSAVRSH APTSDFLLDC LPAAAETAPA KEKRAKLDRV EKPLPPGARR  120
IDGFFRKNAD PVEGS*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.17e-32NF-YC family protein