PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_01.2344

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C2H2

Protein Properties

Length: 451aa MW: 49852.1 Da PI: 8.7184

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_01.2344	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	71	93	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H evm.model.AsparagusV1_01.2344 71 FVCEICNKGFQRDQNLQLHRRGH 93 89*******************88 PP
2	zf-C2H2	12	0.00062	147	169	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + evm.model.AsparagusV1_01.2344 147 WKCEKCSKKYAVQSDWKAHSKIC 169 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence
MMKGLIIQQQ QVEENMSNLT SAASGDQACS VSSNPNPAPA AKKKRNLPGN PDPDAEVIAL 60 SPKTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLK QRSNKEVRKK VYICPEVSCV 120 HHDPSRALGD LTGIKKHFSR KHGEKKWKCE KCSKKYAVQS DWKAHSKICG TREYRCDCGT 180 LFSRRDSFIT HRAFCDALAE ESARAITNNP LANHHHPILF SQPPPPQTTI QTSSLDPSHY 240 NQFPQFPNLM MMKRESNQNE FPSWLSCPQS SSTSLNHLDL IQEYNNNSQD QNPAQSIPQT 300 LPPPPISNPH MSATALLQKA AQMGATMSRP STHQAQMAPA HHSPNPNNAV SSSMFGLGLM 360 SSHHQEMMMA NGFDPHGSFG EAMESLGRAS QGKEEGGNIN GGGGGEEMTR DFLGLRALPH 420 RDILNMAGLD HCMSSSSSYD QAQQGKKPWN *

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence

MMKGLIIQQQ QVEENMSNLT SAASGDQACS VSSNPNPAPA AKKKRNLPGN PDPDAEVIAL  60
SPKTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLK QRSNKEVRKK VYICPEVSCV  120
HHDPSRALGD LTGIKKHFSR KHGEKKWKCE KCSKKYAVQS DWKAHSKICG TREYRCDCGT  180
LFSRRDSFIT HRAFCDALAE ESARAITNNP LANHHHPILF SQPPPPQTTI QTSSLDPSHY  240
NQFPQFPNLM MMKRESNQNE FPSWLSCPQS SSTSLNHLDL IQEYNNNSQD QNPAQSIPQT  300
LPPPPISNPH MSATALLQKA AQMGATMSRP STHQAQMAPA HHSPNPNNAV SSSMFGLGLM  360
SSHHQEMMMA NGFDPHGSFG EAMESLGRAS QGKEEGGNIN GGGGGEEMTR DFLGLRALPH  420
RDILNMAGLD HCMSSSSSYD QAQQGKKPWN *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	98	110	KLKQRSNKEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-108	C2H2 family protein