PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_01.2686
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB
Protein Properties Length: 253aa    MW: 28664.2 Da    PI: 5.8944
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_01.2686genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.95.6e-141764148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                   +g W++eEde+l + + ++G g+W+ +++  g++R +k+c++rw +yl
  evm.model.AsparagusV1_01.2686 17 KGLWSPEEDEKLFNHIMRFGIGCWSNVPKQAGLKRWGKSCRLRWMNYL 64
                                   678*****************************99************97 PP
2Myb_DNA-binding44.24.5e-1470114147
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                    rg+++t+E++l++ +   lG++ W+ Ia+ ++ gRt++++k++w++ 
  evm.model.AsparagusV1_01.2686  70 RGNFSTQEEDLIIGLQGILGNR-WSQIASQLP-GRTDNEIKNYWNST 114
                                    89********************.*********.***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    
MGRNPSNMTT QKEKLRKGLW SPEEDEKLFN HIMRFGIGCW SNVPKQAGLK RWGKSCRLRW  60
MNYLRPDLKR GNFSTQEEDL IIGLQGILGN RWSQIASQLP GRTDNEIKNY WNSTLKKKLR  120
KMGVDLLTHK PISDAEQQQE EKSSCANFSM KSFFDSSPVT EFKVDISIDT IYDQLLQCTV  180
PEKWGYYEDS SSIGSSNSSN LIEDGALNWT SDCKLISFAE DQFNLSVDYS TFQSMPSMSS  240
SDVLFGISAG DS*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.33e-66MYB family protein