PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_01.2850
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family NF-YC
Protein Properties Length: 188aa    MW: 21665.3 Da    PI: 5.5741
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_01.2850genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC117.27.5e-3751151499
                          NF-YC   4 sfwekq.....iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksd 78 
                                    +fw  +       +  ++k+h+lPlarik+i+k de+vkm+s+++P+l++kacelfilelt+rs+l+a+++ r t++++d
  evm.model.AsparagusV1_01.2850  51 AFWWCErfevdHCHLLELKQHSLPLARIKRIMKLDEEVKMVSCDTPALFAKACELFILELTVRSFLEAQHQMRLTIRRCD 130
                                    55544434433446789*************************************************************** PP

                          NF-YC  79 iaaavtrtdifdflvdivprd 99 
                                    ia av  +++  fl +ivp +
  evm.model.AsparagusV1_01.2850 131 IAGAVHGAKVLSFLKNIVPAE 151
                                    *******************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    
MDPAAPFMYN FMQVPTTPPP WANQMHNRVE QLPQSKTQEQ LRKILEDHLT AFWWCERFEV  60
DHCHLLELKQ HSLPLARIKR IMKLDEEVKM VSCDTPALFA KACELFILEL TVRSFLEAQH  120
QMRLTIRRCD IAGAVHGAKV LSFLKNIVPA EAMATWKMFF PEELGMAEEP DVDDYIISEP  180
PPPPPLQ*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.26e-31NF-YC family protein