PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_01.3328
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family bHLH
Protein Properties Length: 223aa    MW: 24627.5 Da    PI: 9.3889
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_01.3328genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.1e-13148193655
                                    HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                            HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                    +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  evm.model.AsparagusV1_01.3328 148 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 193
                                    689*********************7....688*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MEAGGSRAYP RPEGEAGGNY SNLVRHSSSP AGLFDQLHVE NGYGVMRGIG GYRNGNESRM  60
KRQSSATAAG LMSQISEIDE ESMGGYGLGS WEEQRSRDSQ TENGTLSHQL GLHKTSSEMS  120
AIEKFLQFQD SVPCKIRAKR GCATHPRSIA ERVRRTRISE RMRKLQELVP NMDKQTNTAD  180
MLDLAVDYIK DLQKQVKTIS DRRANCTCSS SSKQKPYTNS TV*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.14e-70bHLH family protein