PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_01.3458
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB
Protein Properties Length: 255aa    MW: 28867.4 Da    PI: 8.1096
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_01.3458genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.4e-161461148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                   +g+W++eEd  l+ ++k+ G+g+W + ++++g++R++k+c++rw++yl
  evm.model.AsparagusV1_01.3458 14 KGPWSQEEDATLKAYIKENGTGNWIALPQKIGLKRCGKSCRLRWLNYL 61
                                   79********************************************97 PP
2Myb_DNA-binding40.27.9e-1368110246
                                    SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                    g ++ eEd+++ ++    G++ W+ Ia+ ++ gRt++++k++w++
  evm.model.AsparagusV1_01.3458  68 GDFSDEEDQIICNLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 110
                                    679******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
MGRAPCCDKA NVKKGPWSQE EDATLKAYIK ENGTGNWIAL PQKIGLKRCG KSCRLRWLNY  60
LRPNIKHGDF SDEEDQIICN LYISIGSRWS IIAAQLPGRT DNDIKNYWNT RLKKKLLGPP  120
LKETSRFSSQ RPKPNSQTLT LNSTALERIQ LHNLQFQGIN NTFSFYNNPA LWSKLHPLRG  180
TNDSLIPTKN TENEPSHNQP VTAGSKDQDS CETSSNFNLM QAELNDLFYA FDEEAISSSS  240
WGLVFQDYET GYDL*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.14e-81MYB family protein