PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_01.3533
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family NF-YC
Protein Properties Length: 204aa    MW: 22658.4 Da    PI: 7.9989
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_01.3533genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC169.54e-53741753101
                          NF-YC   3 ksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdi 79 
                                    k fw++q   ie++tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt rsw haeenkrrtl+k+di
  evm.model.AsparagusV1_01.3533  74 KLFWADQyreIEQTTDFKNHSLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRSWAHAEENKRRTLQKNDI 153
                                    78***99999********************************************************************** PP

                          NF-YC  80 aaavtrtdifdflvdivprdel 101
                                    aaa+trtd+fdflvdivpr+e 
  evm.model.AsparagusV1_01.3533 154 AAAITRTDVFDFLVDIVPREEG 175
                                    *******************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    
MNHTGSSKSF ARHMTDYDFI SKYGSSARAQ PSSCYGGCSP TPLPAANSCV HRHAYKPYHT  60
SANNSSSSSS SSSKLFWADQ YREIEQTTDF KNHSLPLARI KKIMKADEDV RMIAAEAPVV  120
FARACEMFIL ELTHRSWAHA EENKRRTLQK NDIAAAITRT DVFDFLVDIV PREEGKEDML  180
GAAAGVPRAL VGNDPLSYYY VQQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145151RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.11e-69NF-YC family protein