PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_01.3544
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family M-type_MADS
Protein Properties Length: 183aa    MW: 20533.1 Da    PI: 10.3712
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_01.3544genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.92.7e-181054246
                                   ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
                         SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                                    i n+  r  tf kRr+g++KK +ELS+LCd+++++++++++  +
  evm.model.AsparagusV1_01.3544 10 YIANDASRRATFKKRRKGLIKKVSELSTLCDVKACLVVYGHDEPV 54
                                   5899*************************************9866 PP
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    
MARKKVKLEY IANDASRRAT FKKRRKGLIK KVSELSTLCD VKACLVVYGH DEPVPEVWPS  60
GADAVRVVAR LKRMPEMEQS KKMMDQEGFM RQRIAKLQEQ VRKLERENRE MEISLSMNER  120
MLGGGGGLEA IGVEEVTGLA WLVEVKVGEV RRRIEAMSKA AKAAPVATSG NPWIMDSFFP  180
LN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLEYIANDASRRATFKKRR
22226KKRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-40M-type_MADS family protein