PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_01.505

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C2H2

Protein Properties

Length: 214aa MW: 23483.7 Da PI: 10.2289

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_01.505	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.3e-05	42	60	3	21
ETTTTEEESSHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHir 21 Cp C+k F+++ L H+r evm.model.AsparagusV1_01.505 42 CPECKKIFPSQKALYGHMR 60 ******************8 PP
2	zf-C2H2	15.7	4.2e-05	102	124	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+Fs+++ L H +H evm.model.AsparagusV1_01.505 102 YQCSTCKKTFSTHEALGGHTASH 124 9***************9998887 PP
3	zf-C2H2	14.1	0.00013	148	169	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++C+++F + L H+r+H evm.model.AsparagusV1_01.505 148 RCKHCNETFATGQALGGHMRRH 169 7********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence
MVSTGKCRLG LKSKLSKPRD SNKTISAKST TNLNSCNEPP ACPECKKIFP SQKALYGHMR 60 CHPNRHYRGV NKPVRRSADT AEHAAAKILV IMSKSTVLTP IYQCSTCKKT FSTHEALGGH 120 TASHNKQRSN VAEIMEGSKD SGVFSERRCK HCNETFATGQ ALGGHMRRHY NGILARGRGQ 180 SVEIVENKHH APENVRVEIN LNGPPPESDG EQR*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17180.1	1e-26	C2H2 family protein