PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_01.516
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family NF-YC
Protein Properties Length: 178aa    MW: 20076.6 Da    PI: 6.0162
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_01.516genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC169.53.9e-53471501101
                         NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksd 78 
                                   ql+ fw++q   ie++tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+file+t r w haeenkrrtl+k+d
  evm.model.AsparagusV1_01.516  47 QLQLFWADQhreIEQTTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILEITHRGWAHAEENKRRTLQKND 127
                                   89*****99999********************************************************************* PP

                         NF-YC  79 iaaavtrtdifdflvdivprdel 101
                                   iaaa+trt++fdflvdivpr+e 
  evm.model.AsparagusV1_01.516 128 IAAAITRTEVFDFLVDIVPREEG 150
                                   ********************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    
MDPQGHGTPP PPMNPAAVQY PAGTPYLPYN HLYHQHQQHQ QQQQTQQLQL FWADQHREIE  60
QTTDFKNHNL PLARIKKIMK ADEDVRMIAA EAPVVFARAC EMFILEITHR GWAHAEENKR  120
RTLQKNDIAA AITRTEVFDF LVDIVPREEG KDEAGVGIGG PDVVAGGDPM GYFYVPQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120126RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.36e-65NF-YC family protein