PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_01.600

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

MYB

Protein Properties

Length: 394aa MW: 45319.5 Da PI: 6.1016

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_01.600	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.5	5.5e-17	175	221	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT eEd ll+++v+++G g W+ Ia+ + gR +kqc++rw+++l evm.model.AsparagusV1_01.600 175 RGQWTLEEDRLLARLVEEYGLGKWSHIAQFLS-GRIGKQCRERWHNHL 221 89****************************.***********97 PP
2	Myb_DNA-binding	59.7	6.4e-19	227	269	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W++eEd++l++a+ +lG++ W+ Ia++++ gRt++++k++w+ evm.model.AsparagusV1_01.600 227 KDTWSEEEDKILIQAHIELGNK-WAEIAKRLP-GRTENSIKNHWN 269 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence
MDFDCLKNQL SFESSANSNE FQDLQRYFND SKDDDLANSS YEFPSLDDIC FKPDMMSNNR 60 EILPLDDFTD LESTNMMLIR SFQHSNMDLS IYDDDDQHRS PYVMESQPHL SRNSSSSSSS 120 SVVVHDVQPL SAFPPSDGFT FQISNSSSLL YHKEANMNIK FPTKKRTQKK SNVVRGQWTL 180 EEDRLLARLV EEYGLGKWSH IAQFLSGRIG KQCRERWHNH LRPNIKKDTW SEEEDKILIQ 240 AHIELGNKWA EIAKRLPGRT ENSIKNHWNA TKRRQFSRKR TRISKYPKSG TPLQNYIKSL 300 GMNPVTQPLL GSIDQNSSFE ENFIQNDRFV PACSFNDVSG YFHGESIADH FGGNERFEME 360 MDWNSGVTAI KAKVEMDLVE MMALKNNDSG SSF*

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence

MDFDCLKNQL SFESSANSNE FQDLQRYFND SKDDDLANSS YEFPSLDDIC FKPDMMSNNR  60
EILPLDDFTD LESTNMMLIR SFQHSNMDLS IYDDDDQHRS PYVMESQPHL SRNSSSSSSS  120
SVVVHDVQPL SAFPPSDGFT FQISNSSSLL YHKEANMNIK FPTKKRTQKK SNVVRGQWTL  180
EEDRLLARLV EEYGLGKWSH IAQFLSGRIG KQCRERWHNH LRPNIKKDTW SEEEDKILIQ  240
AHIELGNKWA EIAKRLPGRT ENSIKNHWNA TKRRQFSRKR TRISKYPKSG TPLQNYIKSL  300
GMNPVTQPLL GSIDQNSSFE ENFIQNDRFV PACSFNDVSG YFHGESIADH FGGNERFEME  360
MDWNSGVTAI KAKVEMDLVE MMALKNNDSG SSF*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	6e-71	MYB family protein