PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_01.635

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

bHLH

Protein Properties

Length: 221aa MW: 24861.1 Da PI: 4.9524

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_01.635	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.1	6.3e-08	49	118	4	44
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...............................TTS-STCHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.as............................kapskKlsKaeiL 44 ++ + Er+RR+++N+++ Lr+++P+ + + kK s ++iL evm.model.AsparagusV1_01.635 49 KNIATERNRRRKLNDKLYALRSVVPNiTKiaeiaelekhkedkssvseiteeddgevRKRRKKRSRSSIL 118 56689*********************66699999999999999999999999999988888889999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence
MDMLEAEYNN YWETKMFYEE LDSWGIDEAL SNLYDSSSPE GPASPITTKN IATERNRRRK 60 LNDKLYALRS VVPNITKIAE IAELEKHKED KSSVSEITEE DDGEVRKRRK KRSRSSILAN 120 GSPGKPYIED IQVRVSEMGE KVQVVSITCT KKKDTLFRVC ELFESLNLKT TSANITSVCG 180 LLSHTLFVES DDMNSVQLKE KIEAALSGYD AMSPISSLSF *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	106	112	RKRRKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57150.1	2e-52	bHLH family protein