PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_01.639
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family GATA
Protein Properties Length: 307aa    MW: 33154.9 Da    PI: 7.7091
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_01.639genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.51.4e-16219255135
                          GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   C++Cg  +  Tp++Rrgpdg++tLCnaCGl+++ kgl
  evm.model.AsparagusV1_01.639 219 CHHCGINSksTPMMRRGPDGPRTLCNACGLMWANKGL 255
                                   ****988888***********************9996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
MNPKPSGLNH RYSMPIQGQI GDAHVGGTAA SAGDESHMMD GEHAIQRYEE GEGGGVEGMD  60
GDHEHEQDHD GDLPSEPIAA IGPQIGSNQL TLSFQGEVYV FDSVSPEKVQ AVLLLLGGRE  120
ITSTVPSVPS TSQQYNKKSN FPHRVASLMR FREKRKERNF DKKIRYTVRK EVALRMQRNK  180
GQFTSSKSKP EDATQSVTTW DGTQRWGTVD GRPQAASECH HCGINSKSTP MMRRGPDGPR  240
TLCNACGLMW ANKGLLKDLS KNPSQSTHNP LPVPKEGNGT AVNGTSVAVS EQQPLAITSN  300
GHASSS*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.22e-77GATA family protein