PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_02.1241
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB
Protein Properties Length: 274aa    MW: 30785.6 Da    PI: 7.5946
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_02.1241genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.2e-171461148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                   +g+WT+eEd +lv +++++G+g+W++++   g+ R+ k+c++rw +yl
  evm.model.AsparagusV1_02.1241 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLMRCSKSCRLRWTNYL 61
                                   79********************************************97 PP
2Myb_DNA-binding46.58.4e-1567112148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                    rg++T+ E+  ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  evm.model.AsparagusV1_02.1241  67 RGNFTPHEEGMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                                    89********************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    
MGRPPCCDKV GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLMRCS KSCRLRWTNY  60
LRPGIKRGNF TPHEEGMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKIKKYQ  120
TAIDSYVTPS DSAATGFHQE LAMRAYSSST TTHSTLPSFG HSSSTYASST ENISKLLEGW  180
MRSSSKTTTI KPEQQDHHQR SIAFNTNNEE LQSLVSIENF GCIGWEKSSA DSEEMSKERS  240
ERQQAPISLL EKWLLDEAAG QVEGLMELSD AVF*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.11e-101MYB family protein