PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_02.1286
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family AP2
Protein Properties Length: 257aa    MW: 28956 Da    PI: 8.9737
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_02.1286genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.21.5e-11964155
                            AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                                   s y+GV++++++gr++A+++d  +n  ++k+ + g ++ +e Aa+ ++ a++k++g
  evm.model.AsparagusV1_02.1286  9 SIYRGVTRHRWTGRYEAHLWDKGWNPlQNKKGRQGGYDEEEAAARTYDLAALKYWG 64
                                   57*******************767667776666688***9**************97 PP
2AP252.41.4e-16107159156
                            AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                                    s+y+GV +++++grW+A+I   +       k+ +lg++ t+eeAa+a++ a+  ++g+
  evm.model.AsparagusV1_02.1286 107 SKYRGVARHHQNGRWEARIGRvV-----GqKYLYLGTYSTEEEAARAYDIAAIHYRGH 159
                                    89****************99955.....34*************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    
MLANGKRSSI YRGVTRHRWT GRYEAHLWDK GWNPLQNKKG RQGGYDEEEA AARTYDLAAL  60
KYWGLQATLN FPAENYVKEY AEMQKMSKEE YLASLRRKSN GFSRGLSKYR GVARHHQNGR  120
WEARIGRVVG QKYLYLGTYS TEEEAARAYD IAAIHYRGHY AVTNFDISSY VDTPKASPQH  180
QSQPQPQPQV KPEPNANTIP FGIPLDSGNQ SATNAGAVQH PWMPGSDNGV DGGEKATDLF  240
DFFNNPGFED NVENLF*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.34e-86AP2 family protein