PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_02.1364
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB
Protein Properties Length: 275aa    MW: 31053.7 Da    PI: 5.5924
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_02.1364genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.6e-171461148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                   +g+WT+eEd  l+ +++++G+++W++++ + g+ R+ k+c++rw +yl
  evm.model.AsparagusV1_02.1364 14 KGPWTPEEDAVLISYIQEHGPRNWRSVPIHTGLMRCSKSCRLRWTNYL 61
                                   79********************************************97 PP
2Myb_DNA-binding51.13.2e-1667112148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                    rg++T+ E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  evm.model.AsparagusV1_02.1364  67 RGNFTPHEEKMIIHLQTLLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                                    89********************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    
MVRPPCCDEV GIKKGPWTPE EDAVLISYIQ EHGPRNWRSV PIHTGLMRCS KSCRLRWTNY  60
LRPGIKRGNF TPHEEKMIIH LQTLLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKIMKYR  120
TTIDSYMTPS DTTTIHQAVP SFLHASSTYA SSTENISRLL KDWMTPVADS NGANGTSAGA  180
CTGTILKQEA QENMTVGNNY DHSACNVALS PQEQLDSLLS FEDWDNSSAD AAFDESNQSI  240
ESNEGSLSLF ETWLLDETAE KMQGRLIEDW QQQY*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.18e-90MYB family protein