PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_02.1537
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family GRAS
Protein Properties Length: 141aa    MW: 15261.8 Da    PI: 5.7239
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_02.1537genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS115.56.7e-3612123262374
                           GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
                                     yysalfdsl+a+++++s+er+ vE++ll+rei+nv+a  g +r+ + + +++Wre+l+++GF+ v+l  +aa+qa lll
  evm.model.AsparagusV1_02.1537  12 XYYSALFDSLSASYSEDSNERHIVEQQLLSREIRNVLAVGGPARTGEIK-FGNWREKLSQSGFRGVSLAGNAAAQATLLL 90 
                                    69*****************************************998887.****************************** PP

                           GRAS 342 rkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                     +++sdgy++ ee+g+l lgWkd  L+++SaW+
  evm.model.AsparagusV1_02.1537  91 GMFPSDGYTLVEENGTLKLGWKDLCLLTASAWK 123
                                    ********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    
MVEQDLTQSG SXYYSALFDS LSASYSEDSN ERHIVEQQLL SREIRNVLAV GGPARTGEIK  60
FGNWREKLSQ SGFRGVSLAG NAAAQATLLL GMFPSDGYTL VEENGTLKLG WKDLCLLTAS  120
AWKPVHTSSA AYLTTSSQKY *
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.12e-65GRAS family protein