PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_02.1919

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

NF-YC

Protein Properties

Length: 259aa MW: 28584.6 Da PI: 4.8669

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_02.1919	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	53.6	4.9e-17	5	79	24	98
NF-YC 24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 +rikki++adedv +i+ +Pvl+ska elf+ +l r++ + ++ +t+ ++++v + ++fdfl div + evm.model.AsparagusV1_02.1919 5 SRIKKIMQADEDVGKIAMATPVLVSKALELFLQDLCDRTYDITLQKGVKTMGSLHLKQCVHSFNVFDFLKDIVSK 79 7***********************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence
MNIESRIKKI MQADEDVGKI AMATPVLVSK ALELFLQDLC DRTYDITLQK GVKTMGSLHL 60 KQCVHSFNVF DFLKDIVSKV PDLGGSDAGG DDKSSKRRKA AADGGNNSDG DLKRSKTEII 120 AGQNSSSNSG RGRGRVRGRG RPKGSGRRVE STRYDKFEDD PGTSPQHDDD NKPEDLKSPD 180 ENKNTIVGDS KPPVRNFDLN LELNKSEDAS GEHHEPKHEE FEGLPMSDIN KMVIDPLKLS 240 LLNDRVDEEE EDYDNEEG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	141	RGRGRVRGRGR
2	131	143	RGRGRVRGRGRPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	2e-44	NF-YC family protein