PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_02.1970
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family HSF
Protein Properties Length: 252aa    MW: 29103.2 Da    PI: 8.2833
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_02.1970genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.81.1e-35251172103
                                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEE CS
                   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweF 81 
                                    Fl+k+y++++d+ +++++sw e++ +fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF
  evm.model.AsparagusV1_02.1970  25 FLTKTYQLVDDPCTDHIVSWGEDEATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEF 95 
                                    9****************************************************************999.........*** PP

                                    EESXXXXXXXXXXXXXXXXXXX CS
                   HSF_DNA-bind  82 khksFkkgkkellekikrkkse 103
                                    +++ F+kg+k+ll++i+r+k++
  evm.model.AsparagusV1_02.1970  96 ANEFFRKGQKHLLSEIHRRKTT 117
                                    *******************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    
MAFLVERCGE MVVSMDSHKA VPAPFLTKTY QLVDDPCTDH IVSWGEDEAT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVA DRWEFANEFF RKGQKHLLSE IHRRKTTNYS  120
QPPHHFQPHQ LPPPPNDHHH HVVERSSYWI NEPPLLPPIP GTNSDYLSAL SEDNQRLRKK  180
NSMLLSELTH MKKLYNDIIY FIQNHVTPRP ARVVEVGPSS VTIMEEPVVA ESSIKLFGVA  240
LNGKKRLHTE G*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.18e-85HSF family protein