PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_02.2106

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C2H2

Protein Properties

Length: 166aa MW: 18757.6 Da PI: 10.2929

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_02.2106	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.2	3.3e-06	49	71	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H evm.model.AsparagusV1_02.2106 49 FVCEICNKGFQRDQNLQLHRRGH 71 89*******************88 PP
2	zf-C2H2	16.6	2.3e-05	125	147	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ evm.model.AsparagusV1_02.2106 125 WKCEKCSKKYAVQSDWKAHVKTC 147 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence
MSNITGDGES FSXXXXPPVK KKRNLPGTPD PTAEVIALSP TTLMATNRFV CEICNKGFQR 60 DQNLQLHRRG HNLPWKLRQR TTSEVRKRAY ICPEPGCVHH NPARALGDLT GIKKHFCRKH 120 GEKKWKCEKC SKKYAVQSDW KAHVKTCGTR EYKCDCGTIF SRSGL*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	3e-85	C2H2 family protein