PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_02.2217

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

SBP

Protein Properties

Length: 988aa MW: 109124 Da PI: 7.0219

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_02.2217	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.4	1.5e-41	140	216	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC adlse k+yhrrhkvCe+hska++++v++++qrfCqqCsrfh l efDe+krsCrrrLa+hn+rrrk+ evm.model.AsparagusV1_02.2217 140 RCQVEGCGADLSESKDYHRRHKVCEMHSKASSAMVNNVMQRFCQQCSRFHLLPEFDEGKRSCRRRLAGHNRRRRKTL 216 6*************************************************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 988 aa Download sequence
MEARFGAEAH QLCEAGPSNL GEKSLEWDLN DWRWDGDLFL ATPLNGNTTP SECRNKRLSN 60 GWSSCSEETD FGKGKGVPEK RRRIVPIEDE EHHDNVVGSL TLNLGGSAYH PVVEADVANW 120 EGSNEKKSKL QGGSSSRLPR CQVEGCGADL SESKDYHRRH KVCEMHSKAS SAMVNNVMQR 180 FCQQCSRFHL LPEFDEGKRS CRRRLAGHNR RRRKTLPDTS NTANPVIDDQ TASYLLITLL 240 RILSNLHTDN SDQSKDQDLL SHLLKSLATL AGLFDSKNLC EMLQASQDSK RLGVSAGTSS 300 EVPNGLTPNG VAPQAFSRDL PSTSKITCAA NSHDRPLRPN DHSVCVAVPT PDSSKRLLTV 360 ASPERARLKE FDLNNAYSDT ENCMEANENS ASPPSLGTGS PISPYLLQDS HQSSPPQMSV 420 NSDSISAPSR SSSNGDAQSR TDRIVFKLFG KDPNDFPLML RSQILNWLSH SPTDLESYIR 480 PGCIILTIYL HLAKSGWDEL CRDLSSNLNR LLYSSADKFW RTGWIFARVQ NHIAFIYNGK 540 VLLSTSRLLG NPYHFKIVSV SPVAAAISSS VNFTVKCLNL AHSNGRLLCA FEGRYLVQET 600 TQAIVSRSGE HEDSECLSFS CSLPNAVGRG FIEVEDDGLS SYFFPFIVAE DDVCSEIRGL 660 ENVINVAADE DEFQDQKNPS NSRSQALYFL NEMGWLLRKS QLRKTPKQVN SSLGDVFSLT 720 RFKWLISFAM DQEWCAVVKS LLDLLFQGTI ALGGLSPNEL ALSEGLLHNA VRKNSRLMVE 780 SLLRYKPDSA AEDRNDFLFR PDVPGPSKIT PLHVVASTNG AESVLDALTD DPGQFGLKAW 840 KTARDVTDFT PEDYARSRGH ESYLNLVQKK IDKQAGNAHV VLSMPNTTSA PATTCKQPDI 900 PKYVKSAGFE IEKGNLKPSR QSYCNLCSQQ MVHRSTSGRS LLYRPAMLSM VGIAAVCVCV 960 GLLFKGPPEV SFVFPPFRWE SLAYGSM*

Sequence ? help Back to Top

Protein Sequence Length: 988 aa Download sequence

MEARFGAEAH QLCEAGPSNL GEKSLEWDLN DWRWDGDLFL ATPLNGNTTP SECRNKRLSN  60
GWSSCSEETD FGKGKGVPEK RRRIVPIEDE EHHDNVVGSL TLNLGGSAYH PVVEADVANW  120
EGSNEKKSKL QGGSSSRLPR CQVEGCGADL SESKDYHRRH KVCEMHSKAS SAMVNNVMQR  180
FCQQCSRFHL LPEFDEGKRS CRRRLAGHNR RRRKTLPDTS NTANPVIDDQ TASYLLITLL  240
RILSNLHTDN SDQSKDQDLL SHLLKSLATL AGLFDSKNLC EMLQASQDSK RLGVSAGTSS  300
EVPNGLTPNG VAPQAFSRDL PSTSKITCAA NSHDRPLRPN DHSVCVAVPT PDSSKRLLTV  360
ASPERARLKE FDLNNAYSDT ENCMEANENS ASPPSLGTGS PISPYLLQDS HQSSPPQMSV  420
NSDSISAPSR SSSNGDAQSR TDRIVFKLFG KDPNDFPLML RSQILNWLSH SPTDLESYIR  480
PGCIILTIYL HLAKSGWDEL CRDLSSNLNR LLYSSADKFW RTGWIFARVQ NHIAFIYNGK  540
VLLSTSRLLG NPYHFKIVSV SPVAAAISSS VNFTVKCLNL AHSNGRLLCA FEGRYLVQET  600
TQAIVSRSGE HEDSECLSFS CSLPNAVGRG FIEVEDDGLS SYFFPFIVAE DDVCSEIRGL  660
ENVINVAADE DEFQDQKNPS NSRSQALYFL NEMGWLLRKS QLRKTPKQVN SSLGDVFSLT  720
RFKWLISFAM DQEWCAVVKS LLDLLFQGTI ALGGLSPNEL ALSEGLLHNA VRKNSRLMVE  780
SLLRYKPDSA AEDRNDFLFR PDVPGPSKIT PLHVVASTNG AESVLDALTD DPGQFGLKAW  840
KTARDVTDFT PEDYARSRGH ESYLNLVQKK IDKQAGNAHV VLSMPNTTSA PATTCKQPDI  900
PKYVKSAGFE IEKGNLKPSR QSYCNLCSQQ MVHRSTSGRS LLYRPAMLSM VGIAAVCVCV  960
GLLFKGPPEV SFVFPPFRWE SLAYGSM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	80	84	KRRRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	SBP family protein