PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_02.272

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

MYB

Protein Properties

Length: 205aa MW: 22647.2 Da PI: 7.0501

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_02.272	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.7	5.7e-18	12	57	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W +eEd lv++v+++G ++W++I++ ++ gR++k+c++rw + evm.model.AsparagusV1_02.272 12 KGAWNPEEDAALVKLVELHGAKNWTAISAGIP-GRSGKSCRLRWCNQ 57 79****************************.*********985 PP
2	Myb_DNA-binding	53.6	5.2e-17	66	108	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed ++ a++++G++ W+tIar+++ gRt++ +k++w++ evm.model.AsparagusV1_02.272 66 PFTPAEDAAIIAAHARYGNK-WATIARMLQ-GRTDNAVKNHWNST 108 89****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence
MEGGGENEEK VKGAWNPEED AALVKLVELH GAKNWTAISA GIPGRSGKSC RLRWCNQLSP 60 TVQHRPFTPA EDAAIIAAHA RYGNKWATIA RMLQGRTDNA VKNHWNSTLR RRKSQGDADD 120 REGEAKRVCR REEDHEKLVT SLSLRMPGDD KEEGGEGKEE EGTGGLREIM RGMIEEEVRR 180 YMSRLGFGDR GSSESLKAES TANS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	5e-46	MYB family protein