PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_02.276
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family HD-ZIP
Protein Properties Length: 164aa    MW: 19144.7 Da    PI: 7.1451
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_02.276genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.14.1e-2083136356
                                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   k++++t++q++ Le+ Fe ++++  e++ +LAk lgL+ rqV +WFqNrRa++k
  evm.model.AsparagusV1_02.276  83 KKRRLTSTQVQLLEKSFEIENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 136
                                   56789************************************************9 PP
2HD-ZIP_I/II119.12.3e-3882155174
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalk 74 
                                   ekkrrl++ qv+lLE+sFe e+kLeperK +la++Lglqprqva+WFqnrRAR+ktkq+Ekdye+Lk+++d l+
  evm.model.AsparagusV1_02.276  82 EKKRRLTSTQVQLLEKSFEIENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQIEKDYEVLKKSFDVLM 155
                                   69*********************************************************************885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    
MTGRRVYGGS EMGVLLQNEG ISSEAFQALI FSSSSHTGFC ASRSMLNFEE ICHSTSNQPF  60
YHPREPEETF DDHYDESLHQ PEKKRRLTST QVQLLEKSFE IENKLEPERK IQLAKDLGLQ  120
PRQVAIWFQN RRARWKTKQI EKDYEVLKKS FDVLMVLLSL FHY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131139RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-40HD-ZIP family protein