PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_02.32
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family HD-ZIP
Protein Properties Length: 172aa    MW: 19969.8 Da    PI: 7.6276
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_02.32genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.56.2e-2072125356
                                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                  k++++t++q++ Le+ Fe ++++  e++ +LAk lgL+ rqV +WFqNrRa++k
  evm.model.AsparagusV1_02.32  72 KKRRLTSTQVQFLEKSFEIENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 125
                                  56789************************************************9 PP
2HD-ZIP_I/II119.91.3e-3871144174
                  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalk 74 
                                  ekkrrl++ qv++LE+sFe e+kLeperK +la++Lglqprqva+WFqnrRAR+ktkq+Ekdye+Lk+++d l+
  evm.model.AsparagusV1_02.32  71 EKKRRLTSTQVQFLEKSFEIENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQIEKDYEVLKKSFDVLM 144
                                  69*********************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    
MGVLLQNEGI SSEAFQALIF SSSSHTGFCG SKSMLNFEEI CHSTSNQPFY HPREPEETFD  60
DHYDESLHQP EKKRRLTSTQ VQFLEKSFEI ENKLEPERKI QLAKDLGLQP RQVAIWFQNR  120
RARWKTKQIE KDYEVLKKSF DVLMLSPFEF VPLLAISIPS KPRMISDGFK K*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120128RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.16e-40HD-ZIP family protein