PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_02.392

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C3H

Protein Properties

Length: 392aa MW: 43388.1 Da PI: 8.469

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_02.392	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.5	2.6e-09	18	43	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +f rtG C++G +CkF+H+ evm.model.AsparagusV1_02.392 18 PGEPDCAYFVRTGLCRFGMTCKFNHP 43 5789*********************8 PP
2	zf-CCCH	42	1.5e-13	65	91	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f+rtGtCk+G++CkF+H++ evm.model.AsparagusV1_02.392 65 PGQPDCQYFMRTGTCKFGATCKFHHPR 91 5789*********************96 PP
3	zf-CCCH	35.1	2.2e-11	113	136	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C++++rtG+Ck+G +CkF+H+ evm.model.AsparagusV1_02.392 113 EKECSYYLRTGQCKFGLTCKFHHP 136 679********************8 PP
4	zf-CCCH	39.5	9.6e-13	257	282	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG Ck+G+ CkF+H++ evm.model.AsparagusV1_02.392 257 DQPECQYYMKTGDCKFGAVCKFHHPR 282 689*********************96 PP
5	zf-CCCH	37.4	4.3e-12	303	327	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++lC f++r+G+Ck+G++CkF H+ evm.model.AsparagusV1_02.392 303 GEPLCLFYSRYGICKFGPNCKFDHP 327 689*********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MNIRCREEMD AGPYPDRPGE PDCAYFVRTG LCRFGMTCKF NHPANRKLAA ASVAARVKGD 60 YPERPGQPDC QYFMRTGTCK FGATCKFHHP RDKAEIAGQV QLNLQGYPLR PNEKECSYYL 120 RTGQCKFGLT CKFHHPHSST APGQQSYAGG LTNWPLSRAS FIPSPRWQGP SSYAQLIVPQ 180 GLVQVSGWNP YSLFLYPVHQ VHWSLTLLDS LYIQNTSPQS EPIAGSQGST FSSYRAGSIP 240 MSLYAAQKEN IFPERPDQPE CQYYMKTGDC KFGAVCKFHH PRERLTPIPN CVLSPFGLPL 300 RSGEPLCLFY SRYGICKFGP NCKFDHPVGT FTYSPTPSSG IPTLTLSSEA GQLNSRSLSI 360 SEPRQTTSSI ENIEAEGSHT TSSIGQVTTF T*

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MNIRCREEMD AGPYPDRPGE PDCAYFVRTG LCRFGMTCKF NHPANRKLAA ASVAARVKGD  60
YPERPGQPDC QYFMRTGTCK FGATCKFHHP RDKAEIAGQV QLNLQGYPLR PNEKECSYYL  120
RTGQCKFGLT CKFHHPHSST APGQQSYAGG LTNWPLSRAS FIPSPRWQGP SSYAQLIVPQ  180
GLVQVSGWNP YSLFLYPVHQ VHWSLTLLDS LYIQNTSPQS EPIAGSQGST FSSYRAGSIP  240
MSLYAAQKEN IFPERPDQPE CQYYMKTGDC KFGAVCKFHH PRERLTPIPN CVLSPFGLPL  300
RSGEPLCLFY SRYGICKFGP NCKFDHPVGT FTYSPTPSSG IPTLTLSSEA GQLNSRSLSI  360
SEPRQTTSSI ENIEAEGSHT TSSIGQVTTF T*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-147	C3H family protein