PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_02.557
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MIKC_MADS
Protein Properties Length: 204aa    MW: 23284.8 Da    PI: 8.2277
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_02.557genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.41.1e-241057249
                                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                                  ri+n   rqvtf+kRr+g+lKKA+ELSvLCda++ +ii+s +gkl+e 
  evm.model.AsparagusV1_02.557 10 RIQNPVHRQVTFCKRRAGLLKKAKELSVLCDADIGIIIYSAQGKLFEL 57
                                  89*******************************************996 PP
2K-box64.92.8e-22831721098
                         K-box  10 eeakaeslqqelakLkkeienLqreqRhllGed.LesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                                   e+++ +++q+e++ Lk+ei+ Lq+ +R + G++ ++ ++l eLq Le++Le  + +iRs+K+++++++i+ l++ke  l+ 
  evm.model.AsparagusV1_02.557  83 EASQPQEMQHEISMLKDEIDFLQKGLRYMFGQGtVGHMTLDELQTLERHLEIWMYHIRSTKMHIMFQEIQSLKNKEGILKT 163
                                   67889**************************96499********************************************* PP

                         K-box  90 enkaLrkkl 98 
                                   +n+ L++k+
  evm.model.AsparagusV1_02.557 164 ANEILQEKI 172
                                   *******98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    
MPRGKVQLRR IQNPVHRQVT FCKRRAGLLK KAKELSVLCD ADIGIIIYSA QGKLFELATN  60
GAMQDLIQRY TGTRGEFQVE GGEASQPQEM QHEISMLKDE IDFLQKGLRY MFGQGTVGHM  120
TLDELQTLER HLEIWMYHIR STKMHIMFQE IQSLKNKEGI LKTANEILQE KIIKQNGFFD  180
EGSTTGDIGY GYPLTIQNGI FNF*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.19e-68MIKC_MADS family protein