PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_03.1001
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family HB-other
Protein Properties Length: 232aa    MW: 26292.7 Da    PI: 5.2907
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_03.1001genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox566.9e-1855111157
                                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                       Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                                    +++ +++++ q+++L+e F+ +r+p +eer+ L ++lgL+  +Vk+WFqNrR + kk
  evm.model.AsparagusV1_03.1001  55 KKPYQRYSPAQTKRLQEIFAIKRHPCEEERRALGEELGLDPLRVKFWFQNRRSQTKK 111
                                    78999************************************************9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MFKFLHVQDD QFCDDIDKLI YEEERLMKLD SGDESQSNNL DSDVVVVEPI ESKKKKPYQR  60
YSPAQTKRLQ EIFAIKRHPC EEERRALGEE LGLDPLRVKF WFQNRRSQTK KKNEKDENTH  120
LKEENRMLKV QNDVYKICIS TATCSNCGLG PNPHDTSAAR AEVLRAENEF VKEEILKLSG  180
VIDRCLKKKS PFAVEPPGDS SVIKPAGDPG VTGLEAEPDI NPDEALGFVS K*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.37e-23HD-ZIP family protein