PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_03.1059
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family NF-YC
Protein Properties Length: 261aa    MW: 29201.9 Da    PI: 6.5088
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_03.1059genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC171.11.3e-53751791102
                          NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkks 77 
                                    ql++fw+++   ie++tdf+nh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+++eenkrrtl+k+
  evm.model.AsparagusV1_03.1059  75 QLQAFWAERileIEQTTDFRNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEIFILELTLRSWINTEENKRRTLQKN 154
                                    89*****988889******************************************************************* PP

                          NF-YC  78 diaaavtrtdifdflvdivprdelk 102
                                    diaaa+trtdifdflvdivprdelk
  evm.model.AsparagusV1_03.1059 155 DIAAAITRTDIFDFLVDIVPRDELK 179
                                    **********************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    
MLKHAHTMEH SPPAHPAVGV PSSSAAQIAY AAPPYQQATM PGPPPASSFP TSSAHLTFQQ  60
AHQFHLQQQQ QQNQQLQAFW AERILEIEQT TDFRNHSLPL ARIKKIMKAD EDVRMISAEA  120
PVVFAKACEI FILELTLRSW INTEENKRRT LQKNDIAAAI TRTDIFDFLV DIVPRDELKE  180
EGLGIPRAAL PMVGGAADSI PYYYAQQHPG MFMGKNMDQS ADFYAAHQPH PGAYMWPQVQ  240
SAQQQQAQQQ HQQQQMPDNG *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148154RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.17e-71NF-YC family protein