PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_03.1178
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family M-type_MADS
Protein Properties Length: 221aa    MW: 24576.1 Da    PI: 9.1399
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_03.1178genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.31.7e-221864147
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                                   kri ++  rqv fskRr+g++KKA+ELSvLC+a++a+i+fs+ gk +
  evm.model.AsparagusV1_03.1178 18 KRITDEEARQVCFSKRRAGLFKKANELSVLCGADIAIIVFSPAGKPF 64
                                   79*****************************************9855 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MVAKNRKPSI GRQKIEIKRI TDEEARQVCF SKRRAGLFKK ANELSVLCGA DIAIIVFSPA  60
GKPFSFGHPS VDFIVNRFLS RNSSSSGSNH PDRFTESRRN ATVAELNRKF TELSKLLEAE  120
KEKKVMLEGK LRGELDLNNL EECRLDELEK IEMALEKLKR DVEMRRNQLE IEALANFVAY  180
GSNGYGGGFG MNVNNDAGLV LASGANEFGY GLGFYDLKGF *
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-31M-type_MADS family protein