PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_03.1220
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family BBR-BPC
Protein Properties Length: 296aa    MW: 32424.8 Da    PI: 10.2943
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_03.1220genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind321.13.4e-9812791300
                      GAGA_bind   1 mdddgsre.rnkg.yyepaaslkenlglqlmssia.erdakirernlalsekkaavaerd..maflqrdkalaernkalv 75 
                                    mdddg  + r +g y+e+   +k  lglqlms ++ +rd+k+  +n  + +++  + e+   m+f  rd ++++      
  evm.model.AsparagusV1_03.1220   1 MDDDGGLNmRSWGsYFEQP--MKGSLGLQLMSNLTaDRDTKPLLSNGGFLHRDRGIPEHSapMDF-VRDGWIHH-----N 72 
                                    999999999****999999..***********9988******99999999998887555444***.9******9.....4 PP

                      GAGA_bind  76 erdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqr 155
                                       nk+l++l++++       +g +++++t+ ++++++     l+ +  +  +eek+ +    ++    ++ +++kkr++
  evm.model.AsparagusV1_03.1220  73 RDTNKILHVLPMNHH------QGFSMIPDTSGAHTIHM-----LQTPHPP--KEEKIAHID--NSI--DNNDATQKKRSQ 135
                                    4568999*9998885......68899********9999.....4333333..333333322..222..222333444556 PP

                      GAGA_bind 156 akkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCC 235
                                    +++ k++k+kk+kk +++ +++ ++    ++ ++ kks+dlv+ng++lD s++P+PvCsCtG ++qCY+WG GGWqSaCC
  evm.model.AsparagusV1_03.1220 136 GRTIKAPKQKKPKKVNNQGRDDLSNGA-ISKGNNGKKSTDLVINGIDLDLSGIPPPVCSCTGNPQQCYRWGVGGWQSACC 214
                                    666666666666665545444443333.3678899********************************************* PP

                      GAGA_bind 236 tttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvti 300
                                    tt+iS+yPLP+s+krrgaRiagrKmS gafkk+LekLa+eG++lsnp+DLk++WAkHGtnkfvti
  evm.model.AsparagusV1_03.1220 215 TTSISTYPLPMSSKRRGARIAGRKMSLGAFKKVLEKLAGEGHNLSNPIDLKTFWAKHGTNKFVTI 279
                                    ****************************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MDDDGGLNMR SWGSYFEQPM KGSLGLQLMS NLTADRDTKP LLSNGGFLHR DRGIPEHSAP  60
MDFVRDGWIH HNRDTNKILH VLPMNHHQGF SMIPDTSGAH TIHMLQTPHP PKEEKIAHID  120
NSIDNNDATQ KKRSQGRTIK APKQKKPKKV NNQGRDDLSN GAISKGNNGK KSTDLVINGI  180
DLDLSGIPPP VCSCTGNPQQ CYRWGVGGWQ SACCTTSIST YPLPMSSKRR GARIAGRKMS  240
LGAFKKVLEK LAGEGHNLSN PIDLKTFWAK HGTNKFVTIS GGGAQVTSKA SVKIEF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.12e-77BBR-BPC family protein