PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_03.1253

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C2H2

Protein Properties

Length: 351aa MW: 39258.6 Da PI: 8.6841

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_03.1253	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.4	6.1e-06	44	66	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C +C++ F r nL+ H r+H evm.model.AsparagusV1_03.1253 44 YVCDICNQGFQRDQNLQMHRRRH 66 9*********************9 PP
2	zf-C2H2	17.1	1.6e-05	122	144	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cgk + +s++k H +t+ evm.model.AsparagusV1_03.1253 122 WVCDKCGKGYAVQSDFKAHVKTC 144 58*******************98 PP
3	zf-C2H2	12.4	0.00047	152	170	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCgk+Fsr +++ H+ t+ evm.model.AsparagusV1_03.1253 152 DCGKVFSRVESFIEHQDTC 170 9***************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MSALDHSFPP SEPLKKKRRP AGTPDPDAEV VSLSPKTLLE SGRYVCDICN QGFQRDQNLQ 60 MHRRRHKVPW KLLKREPVGE VKKRVFVCPE PSCLHHDPSH ALGDLVGIKK HYRRKHSDRR 120 QWVCDKCGKG YAVQSDFKAH VKTCGTRGHT CDCGKVFSRV ESFIEHQDTC NTNQRQLQPQ 180 PQIPHQSLSL SQTTTSPSPS PSTDTAWSSL LRPNFELQLL PPSPPQPTTT TNSNSTSSDD 240 ETQIAHLNLS LGPTSPAVEK AEADEARLHA RRQVELAEME LMNAKRIRQQ AQAELDKAFV 300 LRDHAAKSIN SLLLQITCQN CKLKLWPKEM IPVDENSVAG SLVIEGNMPN *

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MSALDHSFPP SEPLKKKRRP AGTPDPDAEV VSLSPKTLLE SGRYVCDICN QGFQRDQNLQ  60
MHRRRHKVPW KLLKREPVGE VKKRVFVCPE PSCLHHDPSH ALGDLVGIKK HYRRKHSDRR  120
QWVCDKCGKG YAVQSDFKAH VKTCGTRGHT CDCGKVFSRV ESFIEHQDTC NTNQRQLQPQ  180
PQIPHQSLSL SQTTTSPSPS PSTDTAWSSL LRPNFELQLL PPSPPQPTTT TNSNSTSSDD  240
ETQIAHLNLS LGPTSPAVEK AEADEARLHA RRQVELAEME LMNAKRIRQQ AQAELDKAFV  300
LRDHAAKSIN SLLLQITCQN CKLKLWPKEM IPVDENSVAG SLVIEGNMPN *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	14	20	LKKKRRP
2	15	19	KKKRR
3	15	20	KKKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-118	C2H2 family protein