PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_03.1470

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

NF-YC

Protein Properties

Length: 255aa MW: 28176.7 Da PI: 5.2863

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_03.1470	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	58.5	1.5e-18	7	86	19	98
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 +++P +rikki++adedv +i+ +P l+ska elf+ +l r++ + + +t++ ++++v+ fdfl d+v + evm.model.AsparagusV1_03.1470 7 TRFPASRIKKIMQADEDVGKIALAVPLLVSKALELFLQDLCDRTYEVTLQRGAKTVNCMHLKQCVKMYSSFDFLSDVVNK 86 579**************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence
MRKKLGTRFP ASRIKKIMQA DEDVGKIALA VPLLVSKALE LFLQDLCDRT YEVTLQRGAK 60 TVNCMHLKQC VKMYSSFDFL SDVVNKVPNL GGAEPCGDEK GISRRRKTLL EDGDAEANEE 120 LRSSKMPMRG ANISSRGRGR GRGRGRGRPP SIRTMEMEKE NTATYMKFDD DNSISPEHGV 180 PNSSGDVGGT EKESVAQSSN PRPIVEETKK EEPPSWPLPE GATNMGIDPS NLYPTSLVNL 240 NMHIDEDEDY DNED*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	108	SRRRKT
2	136	145	RGRGRGRGRG
3	136	146	RGRGRGRGRGR
4	138	147	RGRGRGRGRG
5	138	148	RGRGRGRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	7e-53	NF-YC family protein