PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_03.1584
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family M-type_MADS
Protein Properties Length: 145aa    MW: 15976.2 Da    PI: 5.0282
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_03.1584genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF542.2e-1735741150
                                   HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                         SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                    tfskRr+g++KKA+ LSvLC+++vav+ +s+  + y y+
  evm.model.AsparagusV1_03.1584 35 GTFSKRRQGLFKKASDLSVLCGVDVAVLALSEAENPYCYA 74
                                   69******************************99888776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    
MMRDHMPWIP PCAPEEVGGR YPLIVKIKKK EAGGGTFSKR RQGLFKKASD LSVLCGVDVA  60
VLALSEAENP YCYASTPSLI CRILSTSPPA PSSSSSSDNV DELWWEEEPI ERMSLDELRV  120
FRGQLAREMQ SIEAEEGGFS RSRP*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-12M-type_MADS family protein