PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_03.1585
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family M-type_MADS
Protein Properties Length: 178aa    MW: 19854.7 Da    PI: 5.4566
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_03.1585genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.41.4e-1660107350
                                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                         SRF-TF   3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                                    ie k     tfskRr+g++KKA+ LSvLC ++vav+ +s+  + y y+
  evm.model.AsparagusV1_03.1585  60 IEKKEAGGGTFSKRRQGLFKKASDLSVLCVVDVAVLALSEAENPYCYA 107
                                    555666667*******************************99888776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    
MRIITSVMTM RPLSLSFDEP SNTEKLIDGA RELQRPRRRP WIPPCAPEEV GGRYPLIVKI  60
EKKEAGGGTF SKRRQGLFKK ASDLSVLCVV DVAVLALSEA ENPYCYASTP SLIRRILSTS  120
PPAPSSSSSS DNVDELWWEE EPIERMSLDE LRVFRGQLAR EMQSIEAEEG GFSRSRP*