PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_03.1613
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family C2H2
Protein Properties Length: 281aa    MW: 30935.3 Da    PI: 8.4224
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_03.1613genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2193.7e-06252274223
                                    EETTTTEEESSHHHHHHHHHH.T CS
                        zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                    +Cp+C++ F+++ +L++H  + H
  evm.model.AsparagusV1_03.1613 252 VCPKCSRAFRDPVLLVQHVEReH 274
                                    7*****************99888 PP
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    
MGTPEFPDLG KHCSVDDCKL IDFLPFDCDR CKKVFCLQHR SYNTHKCPNA DDNDVTVLIC  60
PLCATGVRLI PNQDPNITWD IHVNTDCDPS NFQRATKKKQ CPVPGCKELL TFSNTIRCRD  120
CTREHCLKHR FGLDHKCPGP KKPDSGFPFV GLLKRSQTVQ PTSSSSSGGS SWWSSSLLNG  180
VMASAESGMQ KLSIATNQAL QKAKDGMAQG SGDGPERCPQ CPARFSSVTA LIHHVEKSHH  240
KGVQQHKVTV DVCPKCSRAF RDPVLLVQHV EREHRGTSKA *
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-114C2H2 family protein