PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_03.1839
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family M-type_MADS
Protein Properties Length: 143aa    MW: 15759.9 Da    PI: 4.8453
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_03.1839genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF529.1e-172572350
                                   --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                         SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                   ie k     tfskRr+g++KKA+ LSvLC ++vav+ +s+  + y y+
  evm.model.AsparagusV1_03.1839 25 IEKKEAGGGTFSKRRQGLFKKASDLSVLCVVDVAVLALSEAENPYCYA 72
                                   555666667*******************************99888776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    
MRTTPWIPPC APEEVGGRYP LIVKIEKKEA GGGTFSKRRQ GLFKKASDLS VLCVVDVAVL  60
ALSEAENPYC YASTPSLIRR ILSTSPPAPS SSSSSDNVDE LWWEEEPIER MSLDELRVFR  120
GQLAREMQSI EAEEGGFSRS RP*