PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_03.1905

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

bHLH

Protein Properties

Length: 328aa MW: 35914.3 Da PI: 5.4392

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_03.1905	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.8	1.3e-05	276	314	13	54
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R++i + + Lr++lP+ ++k + +++L +A++Y+ksL evm.model.AsparagusV1_03.1905 276 REKIHETIGVLRRILPEG---KGKGKDAVSVLDEAIRYLKSL 314 999************8...5666889**********99 PP

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence
MVCQAATQTR FRALKHEYGI AGNATIIVRV IACFQPLQDC QAEYFRHLLK PVTVYLGIND 60 SGAVLMEKDC DHLQLRSFNC ATNVGAPALA KQSTNPVVFP TYADPYGFFH LNPALMPPSN 120 PTGFASGQKR FMVFDRSGDR TNLIYTSFGS QFPYPYQTNA GVKQQLPASN ETNVSNGDVK 180 EEMHEDTDEI DALLYSDSDN EQEEEEESTG HSPFDATGIN FDDREGEVAS SAVLQPPPPP 240 AKRRRASSEL DSSLADTASS TNCFSNDIEC IKKVKREKIH ETIGVLRRIL PEGKGKGKDA 300 VSVLDEAIRY LKSLRLKAKG LGSSPAI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	242	275	KRRRASSELDSSLADTASSTNCFSNDIECIKKVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29950.1	7e-06	bHLH family protein