PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_03.2014
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family TCP
Protein Properties Length: 227aa    MW: 25686.8 Da    PI: 10.3267
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_03.2014genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP100.53e-31441873110
                            TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa............ 70 
                                    g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WL+++a+++i +l+ ++++++            
  evm.model.AsparagusV1_03.2014  44 GGKDRHSKVSTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLINKAQHEINKLPPLKFPPQglnqgdgdhskg 123
                                    79*************************************************************77777443333333222 PP

                            TCP  71 seceaesssssasnsssg....................................kaaksaa.kskksqksaasalnl 110
                                    ++               +                                    ++a +   +s ++++sa+ + ++
  evm.model.AsparagusV1_03.2014 124 NDI-------------VNaqvlshevhqrdnssyyqleainaylsqhgirssqsNEAHAMVfPSMFQSHSANPMMDF 187
                                    111.............1122222222222233455666665555555554443322222222444444444444444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MIRNQSNKDL STKQEGNHKA PPTSSRILSA LRNPRIVRVS REFGGKDRHS KVSTVRGLRD  60
RRVRLSVPTA IQLYDLQDRL GLNQPSKVVD WLINKAQHEI NKLPPLKFPP QGLNQGDGDH  120
SKGNDIVNAQ VLSHEVHQRD NSSYYQLEAI NAYLSQHGIR SSQSNEAHAM VFPSMFQSHS  180
ANPMMDFNAK EYFNEFEMAR SVSQMPQSNM EINSVHLNSS QPRSFQ*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.13e-45TCP family protein