PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_03.2048

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C2H2

Protein Properties

Length: 211aa MW: 23425 Da PI: 8.8167

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_03.2048	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00085	170	192	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ F++ L H r+H evm.model.AsparagusV1_03.2048 170 HECSICGRLFRSGQALGGHKRSH 192 78******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence
MDQDRKLQCQ FCPKFFPCAR SLDDHMSIHV PPLAAAGYGL RGKPKRTTSF GDLQCAENSE 60 GRMKSHSQRT QGAKEEDDER SLSKKQRRIS SEYPKEKVDG AIALMKLSRD KRKRGNGAPE 120 YSDENPAKHQ ELSFEDEDDD SLKRRRRKKK SGSNGLEADG DRDEAEGLGH ECSICGRLFR 180 SGQALGGHKR SHSSKVAPKI VDHDADLGGQ *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	149	LKRRRRKK
2	143	148	KRRRRK
3	143	149	KRRRRKK
4	144	150	KRRRRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26590.1	1e-09	C2H2 family protein