PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_03.2049
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family C2H2
Protein Properties Length: 149aa    MW: 16370.5 Da    PI: 10.1508
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_03.2049genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0011104126123
                                    EEETTTTEEESSHHHHHHHHHHT CS
                        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                    y+C++Cg  F++   L  H r H
  evm.model.AsparagusV1_03.2049 104 YQCSICGAGFRSGQALGGHKRAH 126
                                    9***********99999999988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    
MRSHSQNSNP QRVKEEDYAR LLNKKQRMAL SEYPKEQVDG ALALMVLSRD EGNLGNGISG  60
FSDKSFSNQR ESVFEDNGDG SLKKKKKKKK KIGSNGFEAG VLGYQCSICG AGFRSGQALG  120
GHKRAHWAKA TQRIVYDDAD LCGQRLMI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18389KKKKKKK
28391KKKKKKKKK
38490KKKKKKK
48591KKKKKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43170.13e-07C2H2 family protein