PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_03.2050
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family C2H2
Protein Properties Length: 198aa    MW: 21694.3 Da    PI: 10.4763
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_03.2050genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.6e-064263223
                                   EETTTTEEESSHHHHHHHHHHT CS
                        zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                                   +C+ Cg+ F+++  L  H+++H
  evm.model.AsparagusV1_03.2050 42 QCGECGREFKSRRALFGHMSSH 63
                                   7*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    
MDQDRSLGRH VRSPVPPPDP GGYRLREKPK RTTGFDDIGE NQCGECGREF KSRRALFGHM  60
SSHSQRAQRA KEEDDARSLS KKQKRVSPEY PKEQVDGALA LMMLSRDQGN WGNGVPGVSD  120
YDDNSLKKKK KKKKKKKKNG SNGLGADAAI NKAGGFQCRV CCKVFGSGQA LGGHWRAHSS  180
RATLRSVDGD DAYFGAQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127133KKKKKKK
2127135KKKKKKKKK
3127138KKKKKKKKKKKK
4128134KKKKKKK
5128136KKKKKKKKK
6128139KKKKKKKKKKKK
7129135KKKKKKK
8129137KKKKKKKKK
9129140KKKKKKKKKKKK
10130136KKKKKKK
11130138KKKKKKKKK
12131137KKKKKKK
13132138KKKKKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-10C2H2 family protein