PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_03.2407
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family HD-ZIP
Protein Properties Length: 236aa    MW: 26285.6 Da    PI: 8.3805
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_03.2407genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox597.8e-19104158256
                                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                       Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                    rk+ ++tkeq   Le+ F+++++++ ++++ LAk+l+L  rqV vWFqNrRa+ k
  evm.model.AsparagusV1_03.2407 104 RKKLRLTKEQSALLEDRFKEHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTK 158
                                    788899***********************************************98 PP
2HD-ZIP_I/II125.62.2e-40104192190
                    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerL 80 
                                    +kk+rl+keq++lLE+ F+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL
  evm.model.AsparagusV1_03.2407 104 RKKLRLTKEQSALLEDRFKEHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTDENRRL 183
                                    69****************************************************************************** PP

                    HD-ZIP_I/II  81 ekeveeLree 90 
                                    +kev+eLr +
  evm.model.AsparagusV1_03.2407 184 QKEVNELR-T 192
                                    *******9.4 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MGMSEDHDTG LALSLGCGPI ITTSHHRRKE PTEPSLTLSL SDDAYAPTMD ATPARLSSPH  60
SPVSSFSTAY PLTMTVKREK EEAEAEVERV SSRTSDEDED GNARKKLRLT KEQSALLEDR  120
FKEHSTLNPK QKQALAKQLN LRPRQVEVWF QNRRARTKLK QTEVDCEFLK RCCETLTDEN  180
RRLQKEVNEL RTMKLAPCER VAGVGGGEGA KGKSGPFVVG TKPHFYNPFT HSATC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153161RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.15e-62HD-ZIP family protein