PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_03.2560
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family YABBY
Protein Properties Length: 192aa    MW: 21341.2 Da    PI: 8.1642
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_03.2560genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY146.52.7e-4511461162
                          YABBY   1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveee 80 
                                    +d+fs se++Cyv+C++Cnt+lav vPs+ l+++vtv+CGhC +l  ++ +    ++ ++s+        l+ el ++  
  evm.model.AsparagusV1_03.2560   1 MDLFSPSEHLCYVHCAYCNTVLAVGVPSKRLMETVTVKCGHCNHLSFLSPRPPWVQTHCTSD--------LHLELFQD-- 70 
                                    6899**************************************98755444443333333333........32222222.. PP

                          YABBY  81 nlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160
                                        n+ +++++s+s ss    ++ d+  ++vp v++PPek+ r Psaynrf+keeiqrika+nP+i hreafs+a+knW
  evm.model.AsparagusV1_03.2560  71 --PCNDCRKSQSSASSSS----SSGDQTNSNVPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSMASKNW 144
                                    ..2233333333333333....345566677889********************************************** PP

                          YABBY 161 ah 162
                                    a 
  evm.model.AsparagusV1_03.2560 145 AK 146
                                    97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    
MDLFSPSEHL CYVHCAYCNT VLAVGVPSKR LMETVTVKCG HCNHLSFLSP RPPWVQTHCT  60
SDLHLELFQD PCNDCRKSQS SASSSSSSGD QTNSNVPFVV KPPEKKHRLP SAYNRFMKEE  120
IQRIKAANPE IPHREAFSMA SKNWAKCEPR TTVLTADNNV TAVRPSGLQP KSVGDGFAGE  180
SFNLFREMER N*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.18e-52YABBY family protein