PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_03.2711
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family HD-ZIP
Protein Properties Length: 207aa    MW: 23627 Da    PI: 7.9345
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_03.2711genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.7e-1949102356
                                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                       Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                    k++++++eq+  Le  F k++++   ++ +LA++lgL+ +qV vWFqNrRa++k
  evm.model.AsparagusV1_03.2711  49 KKRKLSDEQVSFLEMSFGKEKKLESGRKMHLATELGLDPKQVAVWFQNRRARWK 102
                                    67799************************************************9 PP
2HD-ZIP_I/II120.96.6e-3949138291
                    HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                    kkr+ls+eqv++LE+sF +e+kLe+ rK++la+eLgl+p+qvavWFqnrRAR+k+k+lE++y +Lk+++da++ ++++Le
  evm.model.AsparagusV1_03.2711  49 KKRKLSDEQVSFLEMSFGKEKKLESGRKMHLATELGLDPKQVAVWFQNRRARWKSKRLEEEYVKLKSEHDAVVVQKCHLE 128
                                    9******************************************************************************* PP

                    HD-ZIP_I/II  82 keveeLreel 91 
                                    +ev +L+e+l
  evm.model.AsparagusV1_03.2711 129 NEVLSLKEKL 138
                                    *******998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    
MASSMKQVEE KMLFSLDLYP QIPQGDQKRT RRRRRRPKAD ELAGTAESKK RKLSDEQVSF  60
LEMSFGKEKK LESGRKMHLA TELGLDPKQV AVWFQNRRAR WKSKRLEEEY VKLKSEHDAV  120
VVQKCHLENE VLSLKEKLLD AEEKIKKLSE GGCSVGDGGG SPSSSSTETY QPPPPAALGE  180
FCGVEDEFMY INEYNCIIMD YGYFFM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12836KRTRRRRRR
23136RRRRRR
33152RRRRRRPKADELAGTAESKKRK
43253RRRRRRPKADELAGTAESKKRK
53354RRRRRRPKADELAGTAESKKRK
63455RRRRRRPKADELAGTAESKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.12e-47HD-ZIP family protein