PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_03.359
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family GRAS
Protein Properties Length: 236aa    MW: 25636.2 Da    PI: 8.7376
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_03.359genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS189.42.4e-58222084296
                          GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesg.....ske 156
                                   ++++sPi+k++h++aN aIl+a+  + ++Hi+Dfd+sqG+Q+++L++a ++R+   + +  + iT+v +p+         +
  evm.model.AsparagusV1_03.359   2 LYDASPIFKLGHVAANFAILDAARDHPKIHIVDFDLSQGVQYASLINAVSERSrhrSLTLLVNITAVCDPTMPyntpsTVN 82 
                                   899************************************************99543335589*******987788898999 PP

                          GRAS 157 eleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPk 237
                                   +l+ +g+++  +A+++gvp++f+v + +r ++le  +L ++ gE+laV l+++l r+ des+s +++rd++L+ vksl P+
  evm.model.AsparagusV1_03.359  83 NLKIIGDKIVTLASRFGVPVRFSV-LNRRASELERASLGCEAGECLAVYLSFALSRIADESASPANPRDQLLRRVKSLGPD 162
                                   ***********************9.599***************************************************** PP

                          GRAS 238 vvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                                   +v +veqe++ n+++F++rf ea+ +y +++dsl+a+++r+++ r  +Er+ lgr+++n
  evm.model.AsparagusV1_03.359 163 IVKLVEQEMNANTAPFATRFGEACGHYGSVLDSLDATMSRDDRGRFRIERA-LGRKASN 220
                                   **************************************************9.9999876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MLYDASPIFK LGHVAANFAI LDAARDHPKI HIVDFDLSQG VQYASLINAV SERSRHRSLT  60
LLVNITAVCD PTMPYNTPST VNNLKIIGDK IVTLASRFGV PVRFSVLNRR ASELERASLG  120
CEAGECLAVY LSFALSRIAD ESASPANPRD QLLRRVKSLG PDIVKLVEQE MNANTAPFAT  180
RFGEACGHYG SVLDSLDATM SRDDRGRFRI ERALGRKASN SEKGHTFVLK ASCSG*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.12e-53GRAS family protein