PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_03.368
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family HD-ZIP
Protein Properties Length: 253aa    MW: 28302 Da    PI: 4.2831
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_03.368genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox611.9e-193790356
                                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                  k+++++ eq+++Le+ Fe ++++  e++++LA++lgL+ rqV vWFqNrRa++k
  evm.model.AsparagusV1_03.368 37 KKRRLSGEQVRALEKNFEVENKLEPERKARLAQELGLQPRQVAVWFQNRRARWK 90
                                  456899***********************************************9 PP
2HD-ZIP_I/II130.66.1e-4236128193
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   ekkrrls eqv++LE++Fe e+kLeperK++la+eLglqprqvavWFqnrRAR+ktkqlE+dy+aLk++ydal+ + ++L 
  evm.model.AsparagusV1_03.368  36 EKKRRLSGEQVRALEKNFEVENKLEPERKARLAQELGLQPRQVAVWFQNRRARWKTKQLERDYSALKSRYDALRLDYDALL 116
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLreelke 93 
                                   +++++L +e+k+
  evm.model.AsparagusV1_03.368 117 RDKDSLLAEVKD 128
                                   *******99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    
MKRLGSSDSL VPACPSGWID EDEDAIEASG AIQGGEKKRR LSGEQVRALE KNFEVENKLE  60
PERKARLAQE LGLQPRQVAV WFQNRRARWK TKQLERDYSA LKSRYDALRL DYDALLRDKD  120
SLLAEVKDLK AKLGGGGEEI FSLVKEEPAA SESXXXXXVE EEEEEPVALI YNNKDGSSDS  180
DSSAVLNDQE ASPLISLNNN AANSSFSSPF FFQQHILKVE DDEFLAGDEP CSSFFHDEQP  240
PTLSWYCGEG WE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16268ERKARLA
28593RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.11e-44HD-ZIP family protein