PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_03.418
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family YABBY
Protein Properties Length: 189aa    MW: 20944.6 Da    PI: 8.1686
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_03.418genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY229.48.9e-7161605170
                         YABBY   5 ssseqvCyvqCnfCntilavsvPstslf.kvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlks 84 
                                    ++e+vCyv+CnfCntilav+vPs+ lf ++vtvrCGhC++llsvn+   +q+l+ ++   ++l++++++ + ++++n   
  evm.model.AsparagusV1_03.418   6 IAPEHVCYVHCNFCNTILAVNVPSNNLFsSIVTVRCGHCANLLSVNMGALVQALPLQDF--QKLQNHQVASQDSHGDN--- 81 
                                   689*********************9998369*************************996..33344444444444333... PP

                         YABBY  85 nvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165
                                        +s++ +++s +l++++d++     p irPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+
  evm.model.AsparagusV1_03.418  82 ----GSSSRCNRPSIMLTQEHDQQQL--LP-IRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSAAAKNWAHFPH 155
                                   ....3334445556666555555544..34.9************************************************* PP

                         YABBY 166 ihfgl 170
                                   ihfgl
  evm.model.AsparagusV1_03.418 156 IHFGL 160
                                   ***97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    
MSTQVIAPEH VCYVHCNFCN TILAVNVPSN NLFSSIVTVR CGHCANLLSV NMGALVQALP  60
LQDFQKLQNH QVASQDSHGD NGSSSRCNRP SIMLTQEHDQ QQLLPIRPPE KRQRVPSAYN  120
RFIKEEIQRI KANNPDISHR EAFSAAAKNW AHFPHIHFGL SLDENKQSKL DDAIATAHGG  180
GQKSQVLY*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.11e-69YABBY family protein