PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_03.549

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C2H2

Protein Properties

Length: 224aa MW: 24372.9 Da PI: 11.1856

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_03.549	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	10	32	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F++ L +H++ H evm.model.AsparagusV1_03.549 10 HPCKHCQRKFKTLQALGTHQKAH 32 78*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence
MTVQDAGLSH PCKHCQRKFK TLQALGTHQK AHKVRHAILK KKQLLNRAQH RRKRQIGMCT 60 SCMSTSTFGA KVTSAIEQAY LMRLQQLAQL RRKRRHSDEP NDVIANFNRQ EPEIVSDGSS 120 SEMNKRPAST PAVSFVTSSI GKLVTAFAPF NLTAAASFRR PTLAPVSVTF TARILGSQTI 180 ASSVVFTVGG VSGVGVDEGD ADELDLGFWR HISGFRARCH GGG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	40	54	KKKQLLNRAQHRRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57520.1	1e-06	C2H2 family protein