PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_03.651
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family HD-ZIP
Protein Properties Length: 163aa    MW: 19272 Da    PI: 7.1462
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_03.651genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.45e-1862116256
                                   T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   rk+ ++++eq e Le++++ + +++++e+ eLA++l+L+ rqV vWFqNrR + k
  evm.model.AsparagusV1_03.651  62 RKKLRLSTEQSEFLENAYRAHATLTQDEKLELAEELNLSPRQVEVWFQNRRSRTK 116
                                   677889**********************************************988 PP
2HD-ZIP_I/II99.43.4e-3262150189
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   +kk+rls+eq+++LE+ ++++ +L++++K ela+eL+l+prqv+vWFqnrR Rtk kq+ ++ e+Lk+ +++l+een+rL+
  evm.model.AsparagusV1_03.651  62 RKKLRLSTEQSEFLENAYRAHATLTQDEKLELAEELNLSPRQVEVWFQNRRSRTKFKQMKMEREYLKKLCESLTEENQRLK 142
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLre 89 
                                   +e+ eL  
  evm.model.AsparagusV1_03.651 143 REMLELLM 150
                                   ***99974 PP
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    
MEIEEEYCNT ELCLGIGREP TSKRNSEQIS SLQINFKEVD QKERKPSIKG GGGEENKPVS  60
IRKKLRLSTE QSEFLENAYR AHATLTQDEK LELAEELNLS PRQVEVWFQN RRSRTKFKQM  120
KMEREYLKKL CESLTEENQR LKREMLELLM LVKCWQKNTQ EE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111119RRSRTKFKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.19e-31HD-ZIP family protein