PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_03.658

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

LBD

Protein Properties

Length: 187aa MW: 20194 Da PI: 7.8433

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_03.658	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	143.2	8e-45	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrr+C+++C +apyfpa++p+kfanvhk+FGasnv kll++lp ++r+da+ss+vyeA+ar+rdPvyG+vg i+ evm.model.AsparagusV1_03.658 13 PCAACKLLRRRCTQECLFAPYFPADEPQKFANVHKVFGASNVNKLLQELPVQHRSDAVSSMVYEANARVRDPVYGCVGAIS 93 7****************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 +lqqq+e l+++la +++e evm.model.AsparagusV1_03.658 94 SLQQQIELLQTQLAIAQAE 112 ************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence
MKEGSRKQGA VSPCAACKLL RRRCTQECLF APYFPADEPQ KFANVHKVFG ASNVNKLLQE 60 LPVQHRSDAV SSMVYEANAR VRDPVYGCVG AISSLQQQIE LLQTQLAIAQ AEMVHVRMRH 120 AAYLAQLGHS PVESTATTTG SGSSSSTAAT TTPSSPNFME MHDGKAMFGL DMVVDQANIS 180 QLMWSC*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	2e-60	LBD family protein